rs215038880 SNP Detail

Summary

• ID
  rs215038880
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90754709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGATGA ATGGAGGAGG
  ACCATGCACA GCAACATGAT GAATCTCACT AGTGATGTGT TGAATGAATG GGTTGGGGTT
  GGAACTCAGT GGTAGAATAC TTGCCTGGTG TGTTTGAAGA ATTTTTCTCC CTAGTATTGA
  ATAAATAAAC CTTAAAAGAC TGAATGCACA AAGCAAGTTG CAATGTTCTT TTGCTTTTTG
  G
  TTTTTTTTTT TTTTGGTTTT GGTTTTGTTT TTTTAAAGAC AAGGTCTCCC TACATAGCCC
  TGGCTGGCTT TGAACTAACA GATAGACCCG CCTCTGCCTC TACCTCTCAA GTGCTGTGAC
  TTGAACTCAC CTCCACACCT CACAACTAAG AGTGACTTGC GTACCCACAT TCAGTGGTAC
  TGTTCATAAC ACCCAAGGCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	I/LnJ	LEWES/EiJ	LG/J	NZO/HlLtJ	PL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss369170668	MGP_WTSI_6_90727721	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	I/LnJ	LEWES/EiJ	LG/J	NZO/HlLtJ	PL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs215038880					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369170668	MGP_WTSI_6_90727721	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90754709 () rs orientation: forward

Symbol	Name	Function Class
E130314K07Rik	RIKEN cDNA E130314K07 gene	15 bp downstream
Iqsec1	IQ motif and Sec7 domain 1	Intron
Rr634323	regulatory region 634323	1123 bp proximal