rs215017971 SNP Detail

Summary

• ID
  rs215017971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44073178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCCATCT CGTGGACCAA
  ACTCCAAGGC AACTCAGTGT CGGTAGTCCT AGAGTGCACC CTGGAATTTA AGCTTTGCCA
  CCCCTGCCAC GAGGCTCTGG CTGAGTGCAG CGTGACAATA CACATGCTAG TCAGCTCTGA
  GTTATCTGTC ACTCCAGGGA TCTAGGCAAT TCTATTACCA AATTTGGGCC TCACAGTTTT
  Y
  CCCCTTGAAG CCAAATTCTG TCACCTGTTC TCCATAAGTT AATGAGAACA GAGTTACTAG
  TAAAAAAAAA AAAAAAAAGC AAAAAAACGG AGGTTAATTC AATGTGGCCA TGTTGGGAAG
  AGGGACAAAG ATATCCAAAG ACATATCCCC TGGATCCATT TTGGGACCTC AGATTTTAGG
  TTAAAATATA TAGAGTTCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100044	CHEV_4_44086050	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215017971					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44073178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	111 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	411 bp distal
Rr591150	regulatory region 591150	within coordinates
Rr591151	regulatory region 591151	181 bp distal
Rr591152	regulatory region 591152	545 bp proximal
Tssr41482	transcription start site region 41482	621 bp upstream
Tssr41483	transcription start site region 41483	485 bp upstream
Tssr41484	transcription start site region 41484	447 bp upstream
Tssr41485	transcription start site region 41485	157 bp upstream