rs214919945 SNP Detail

Summary

• ID
  rs214919945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151952542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGTACC TGCTATTTGC
  ACTCATCCTC TTCTACAGAC TGCAGAGATG ATAGGGTGGC TGTTCCTCCT CAGAGTCTAG
  TCACTTCATT TACATGCTCT ACAGACAGAA TCCTTGGGCT AGACTTGAGA GCTTATTAAG
  TAAAGTCCTT GTCTTGGAAA CATGAGGATC TGAGTTGAGT CCCCAGAGCC CAAGTAAAAC
  Y
  AGGTGCACAC CTGTAATCTC AGCACAGGGG AGGCAGAGAC AAGCGGATTC CTCAGACTGC
  TAGCCAGTCC TGTCAGAGAA TGGCATCCAA GGTTGTCTGG CTTCTCCTAG CTTGGGCAAG
  TACACATACC ATACACACAT GCTGAATTCC AAACCACTGT TGAGTTAGCT TTTGTCTTAC
  CATGCTTCTC CTTGCTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360262416	MGP_WTSI_3_151909869	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214919945					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360262416	MGP_WTSI_3_151909869	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151952542 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587498	regulatory region 587498	1256 bp distal
Rr587499	regulatory region 587499	1200 bp distal
Rr587500	regulatory region 587500	1034 bp distal
Rr587501	regulatory region 587501	742 bp distal
Rr587502	regulatory region 587502	443 bp distal
Tssr36179	transcription start site region 36179	203 bp downstream
Tssr36180	transcription start site region 36180	281 bp downstream
Tssr36181	transcription start site region 36181	305 bp downstream
Tssr36182	transcription start site region 36182	320 bp downstream
Tssr36183	transcription start site region 36183	348 bp downstream
Tssr36184	transcription start site region 36184	1051 bp downstream
Tssr36185	transcription start site region 36185	1067 bp downstream
Tssr36186	transcription start site region 36186	1175 bp downstream
Tssr36187	transcription start site region 36187	1352 bp downstream
Tssr36188	transcription start site region 36188	1420 bp downstream
Tssr36189	transcription start site region 36189	1446 bp downstream
Tssr36190	transcription start site region 36190	1524 bp downstream