rs214879923 SNP Detail

Summary

• ID
  rs214879923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54495567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTAGTAG AGGTGCCTGT
  TGTCTACAGC GTCTGACCAT GCTACTGATG TCATGTGAAG GTAAGACGAA GCCACATGTA
  GGCAAAGACA TGTCTGAAAA GACAGACAGC AGGACCTGAG GACAATTCGT CCTCCTGATC
  AAACCGTTCC TGCAGCAGAC ACTCCTCAAT TTTGAGTCAG GGGAACCAAT AACCGCCCCC
  Y
  ACCCCCTTCT ATCTTTGGGT CTGTTTTCTG TTAGTAGTAG AAAAATCCTT AAGAACCAGA
  CTCTTGTCTT AGGAATAATG ATAAATAACA ACAACAACAA CAAAAAAAAG CTAGAGTTGC
  TGTAGTATAA ATATGTTTTT CATCTTTTTT GAAATGACAG CCCTGTGACA GACTTGTAAC
  TAATAAGTCC ACCATGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772033	CHEV_3_54392068	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214879923					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54495567 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr367440	regulatory region 367440	1923 bp upstream
Rr576811	regulatory region 576811	214 bp distal
Rr576812	regulatory region 576812	102 bp proximal
Rr576813	regulatory region 576813	1830 bp proximal