rs214820313 SNP Detail

Summary

• ID
  rs214820313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGAAAGGG ATTTTAAAGA
  TGATGAGTTT ACGTTTGAAT AGGCTGTGCT GGTGCACTGT CCCGGGAAGG GCCCTTGAAC
  TTAGAGGGTC AAATACAACT ATTGATTCTG GGTGATCACT AAGTTAATAA ATGGCAGGAT
  CCAGACTGAC ACCCCTGATC CCTGTTGAAG TTACATCCCT CTGAACGACT GGTCAACTGC
  R
  GGGCAGCCTG CTTGAAGAGG GTTACCTGTC CCTAGGACAC TGAACAGGCA TTTGTTTTTC
  CTAGAAGACA GTTCACCAGC TGGAGAGGAG TCGTCTCCCG TAGTTTCTGT TTGGTTGCTT
  TTGGTTTTTG TTTGGTTTTG GTTTTTTAAT TATCTGGCAT CCAGGACTTG ATGGAAAATA
  ACCAGAGCTA AGCTCACCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss369791554	MGP_WTSI_6_117122636	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs214820313					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791554	MGP_WTSI_6_117122636	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149579 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1995 bp distal
Rr637288	regulatory region 637288	within coordinates
Rr637289	regulatory region 637289	1248 bp proximal
Rr637290	regulatory region 637290	1433 bp proximal
Rr637291	regulatory region 637291	1484 bp proximal
Tssr58392	transcription start site region 58392	1131 bp downstream
Tssr58393	transcription start site region 58393	1112 bp downstream
Tssr58394	transcription start site region 58394	1072 bp downstream
Tssr58395	transcription start site region 58395	874 bp upstream
Tssr58396	transcription start site region 58396	890 bp upstream
Tssr58397	transcription start site region 58397	928 bp upstream
Tssr58398	transcription start site region 58398	954 bp upstream
Tssr58399	transcription start site region 58399	976 bp upstream
Tssr58400	transcription start site region 58400	1004 bp upstream
Tssr58401	transcription start site region 58401	1040 bp upstream
Tssr58402	transcription start site region 58402	1071 bp upstream
Tssr58403	transcription start site region 58403	1089 bp upstream
Tssr58404	transcription start site region 58404	1108 bp upstream
Tssr58405	transcription start site region 58405	1150 bp upstream
Tssr58406	transcription start site region 58406	1180 bp upstream
Tssr58407	transcription start site region 58407	1211 bp upstream
Tssr58408	transcription start site region 58408	1278 bp upstream
Tssr58409	transcription start site region 58409	1300 bp upstream
Tssr58410	transcription start site region 58410	1322 bp upstream
Tssr58411	transcription start site region 58411	1338 bp upstream
Tssr58412	transcription start site region 58412	1365 bp upstream
Tssr58413	transcription start site region 58413	1378 bp upstream
Tssr58414	transcription start site region 58414	1411 bp upstream
Tssr58415	transcription start site region 58415	1426 bp upstream
Tssr58416	transcription start site region 58416	1441 bp upstream
Tssr58417	transcription start site region 58417	1495 bp upstream
Tssr58418	transcription start site region 58418	1528 bp upstream
Tssr58419	transcription start site region 58419	1547 bp upstream
Tssr58420	transcription start site region 58420	1574 bp upstream
Tssr58421	transcription start site region 58421	1593 bp upstream
Tssr58422	transcription start site region 58422	1619 bp upstream
Tssr58423	transcription start site region 58423	1627 bp upstream
Tssr58424	transcription start site region 58424	1689 bp upstream
Tssr58425	transcription start site region 58425	1734 bp upstream
Tssr58426	transcription start site region 58426	1756 bp upstream
Tssr58427	transcription start site region 58427	1783 bp upstream
Tssr58428	transcription start site region 58428	1798 bp upstream
Tssr58429	transcription start site region 58429	1863 bp upstream
Tssr58430	transcription start site region 58430	1908 bp upstream
Tssr62617	transcription start site region 62617	938 bp downstream
Tssr62618	transcription start site region 62618	960 bp downstream
Tssr62619	transcription start site region 62619	996 bp downstream
Tssr62620	transcription start site region 62620	1039 bp downstream
Tssr62621	transcription start site region 62621	1105 bp downstream
Tssr62622	transcription start site region 62622	1657 bp downstream
Tssr62623	transcription start site region 62623	1675 bp downstream
Tssr62624	transcription start site region 62624	1790 bp downstream
Tssr62625	transcription start site region 62625	1941 bp downstream