rs214819532 SNP Detail

Summary

• ID
  rs214819532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59549574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCCGCCC CCTCGGCGTC
  GACGCCCTCC CGGGGCTCGG CTGGACTCCA GGGCGCCCTC TTCCCGCCTT CGCCTCTTTG
  CCCCGCCCCG ACACCACCAC CCCCGCCCAT GCCTCCGCGC GCGTGCGCGC CCCCCGCCCA
  GCGTCGCGCC TGCGTTCGCG GGAACGCGCG CCTTGTGCTT CCCGCTTCGC GACTCGCCCT
  Y
  CTACAAGCCC GCGGGCCTTC CGGCTCCCGG GACTCAGGCT TAGGGCCCTG AACGGTGCTG
  GCTAGAAAAG CCTGGGGACC CCAGGGAACT TTTGAAGCAG AGCAGAGTTA CTACTGGCGG
  GCGACACTGC TGGCAGCACG GCAGGGGACC CGCGCGACGT CCACGGGGCA GGGGTGGACA
  GTGGTCTTTC CGGACCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361694535	MGP_WTSI_4_59562446	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214819532					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361694535	MGP_WTSI_4_59562446	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59549574 () rs orientation: forward

Symbol	Name	Function Class
1700018M17Rik	RIKEN cDNA 1700018M17 gene	within coordinates
Cpgi14347	CpG island 14347	within coordinates
Ptbp3	polypyrimidine tract binding protein 3	286 bp upstream
Rr593081	regulatory region 593081	1557 bp distal
Rr593082	regulatory region 593082	848 bp distal
Rr593083	regulatory region 593083	within coordinates
Rr593084	regulatory region 593084	465 bp proximal
Tssr41946	transcription start site region 41946	271 bp upstream
Tssr41947	transcription start site region 41947	249 bp upstream