rs214808561 SNP Detail

Summary

• ID
  rs214808561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101442126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTGAAGG ATCGCAGACA
  GCACCATCTC AGGGGCTGGA GTTCCAGTCT AAATGAAGGG GGCAGAAGCA AGGTGAGCAC
  CAATGGTTAC CTTCCTCTGC TTCTTGACCA GAGATACAGG ATGACAAGCT GCCTCACACT
  GCTGCCAAGG TGCCTTCCCC ACTGTGACAG ACTGCATCCT TCAGATGGAG ATAAACCCTT
  Y
  CTTCTTTTAA GATGCTTTGC TTTTGGGAAA AGGTAGGAAT GCAGGCCCTA ACCTGTAAAA
  CAGCATTGTC CTGGAGTTAG CAAGATCCAG GAGAGTGTGG ACCTAAAGTT TGCTCTCCAG
  GATTTTCAAG GGTAGGGTCT GGTTTTTGTT TTATTAGATG TGTTTAATTA TGCATATTTG
  TTGTCTTTTA AGATTATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320852442	CHEV_3_101338733	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214808561					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101442126 () rs orientation: forward

Symbol	Name	Function Class
Gm33162	predicted gene, 33162	within coordinates
Gm65570	predicted gene, 65570	within coordinates
Gm65575	predicted gene, 65575	1833 bp upstream
Rr582075	regulatory region 582075	1124 bp distal
Rr582076	regulatory region 582076	1482 bp proximal
Rr582077	regulatory region 582077	1768 bp proximal
Tssr34790	transcription start site region 34790	1625 bp downstream