rs214793385 SNP Detail

Summary

• ID
  rs214793385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75773556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGCGAG CTGATCGGCT
  GATCAGCGCT TTGTGCTGTG GTTCCCTCCA CAGGTCTGAG CTCCCTGCCC TGAAGAGGCT
  GTGGGCCTGC TCATCGCCTA ACCCCTCACC GACAGCTTGA TGGAAAGGAG AGGTTCCATG
  TGACTGGGAG TAAGGAAGGA TCGTTCTCAC CCCGCAGACT AACAGGAGAC ATAATTATTC
  R
  ATTAAAAAGT TTACTTTAGA CCACAGCCTG CTGTGTGCCC ATTTACTGCC CTGTTGGCTG
  GCGGGGGGGG GGGGGGGGGG GCAGGATCAG GGGAGATAGG GGAACAGCTA TCTTGTTAAT
  GTGCTATGCC TCATCTTTGC GGAGGTGGGA GAGAGGATGT GGGAGTTGGG GATCTTGTTA
  TAGAACCCTG AGCTGTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934139	MGP_WTSI_10_75400467	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214793385					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934139	MGP_WTSI_10_75400467	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75773556 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10			mRNA-UTR
Gm867	predicted gene 867			mRNA-UTR
				Noncoding-Transcript-Variant
Rr384937	regulatory region 384937			within coordinates
Rr401998	regulatory region 401998			1677 bp downstream
Rr434185	regulatory region 434185			within coordinates
Tssr94149	transcription start site region 94149			1850 bp downstream
Tssr94150	transcription start site region 94150			1814 bp downstream
Tssr94151	transcription start site region 94151			1463 bp downstream
Tssr94152	transcription start site region 94152			1430 bp downstream
Tssr94153	transcription start site region 94153			1400 bp downstream
Tssr94154	transcription start site region 94154			1389 bp downstream
Tssr94155	transcription start site region 94155			1305 bp downstream
Tssr94156	transcription start site region 94156			548 bp downstream
Tssr94157	transcription start site region 94157			527 bp downstream
Tssr94158	transcription start site region 94158			389 bp downstream
Tssr98154	transcription start site region 98154			666 bp downstream