rs214792963 SNP Detail

Summary

• ID
  rs214792963
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140689223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCG GAGGGCGGTG GACTCTGCAA
  K
  GCAATGCACT TGACCCGCAG AGGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss640637279	FVB_NJ_4_140517827	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	T	T	T	G	T	T	G	T	G	G	T	T	T	T	G	T	T	G	T	T	T	G	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs214792963					SNP	T	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	T	T	T	G	T	T	G	T	G	G	T	T	T	T	G	T	T	G	T	T	T	G	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640637279	FVB_NJ_4_140517827	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140689223 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15201	CpG island 15201			within coordinates
Gm34431	predicted gene, 34431			470 bp upstream
Gm68270	predicted gene, 68270			662 bp upstream
Rr367768	regulatory region 367768			within coordinates
Rr603592	regulatory region 603592			699 bp distal
Rr603593	regulatory region 603593			717 bp distal
Rr603594	regulatory region 603594			182 bp distal
Rr603595	regulatory region 603595			604 bp distal
Rr603596	regulatory region 603596			819 bp proximal
Rr603597	regulatory region 603597			1492 bp proximal
Rr603598	regulatory region 603598			1816 bp proximal
Sdhb	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)			Intron
				Noncoding-Transcript-Variant
Tssr40003	transcription start site region 40003			619 bp downstream
Tssr40004	transcription start site region 40004			600 bp downstream
Tssr40005	transcription start site region 40005			510 bp downstream
Tssr40006	transcription start site region 40006			497 bp downstream
Tssr40007	transcription start site region 40007			1282 bp upstream