rs214767234 SNP Detail

Summary

• ID
  rs214767234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:120954861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG CTGGCCTGGG GCTTACTATA
  Y
  AGACCAAGCT GCTTCCCAAA TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	MOLF/EiJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss916399747	MGP_WTSI_3_121161212	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	MOLF/EiJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs214767234					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916399747	MGP_WTSI_3_121161212	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120954861 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584007	regulatory region 584007			634 bp proximal
Rwdd3	RWD domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr35395	transcription start site region 35395			1980 bp upstream