rs214650826 SNP Detail

Summary

• ID
  rs214650826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:162358152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGTAGAGG GATGGCAGGC ACAGGCCACT GATCTCTCGG
  CTTAGGCCAC TGTGCAGATC TATTTCTTCC GAGAACCATT TACAGTGAGA GGGTAAATCT
  Y
  GCTGTCCGTG TTGATCTGGG CCAACCAAGC ATCCATTATC TGGCCAGACT CTCTAAATCA
  AAGCTTGGCA AACTGGCCGA CAGCCCCAGT CTGGCCCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320600798	CHEV_2_162341968	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214650826					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162358152 () rs orientation: forward

Symbol	Name	Function Class
Ptprt	protein tyrosine phosphatase receptor type T	Intron
Rr569207	regulatory region 569207	889 bp proximal