rs214586469 SNP Detail

Summary

• ID
  rs214586469
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109284322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTTTCT TCAAATTATT
  CCAGGATGAA TAGGCGATTT CACCATAGAA GTTATATATT TGGAAAATTA AAAAATGAAT
  CATTTAACTA CTGTGGGCTT ACTGTCATAA TTTTCACTTA CAGGTGTCTC CTTGGGAGCT
  TTTCTGAAAA TAGGCTATGC TGCCTGAAGG ACGACAGGTT CCATGTCTGA GAAGTGTAAA
  M
  TTTTCTGCGT CTTTTAGAAT TATGCTTGTT GTCATTCCTC ATGCATAGCG CTAGGATTTA
  TCGTTTTAGG CAAACATTCT TGTAGGTGGT TTCTAGCTTT TTGTCACTAA GGGCATTTTT
  AGAATTTAGA GGAGGAAATT GTCACATCCC CTCCCCCCAA CCCCCCAAGC TCCCTATACT
  CAGCAGGCTC TGGTAAGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320868589	CHEV_3_109179924	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214586469					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109284322 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583413	regulatory region 583413			1187 bp proximal
Vav3	vav 3 oncogene			Intron
				Noncoding-Transcript-Variant