rs214581480 SNP Detail

Summary

• ID
  rs214581480
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:34075002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACGGCGC CCGCCCGCCC
  GCGTGGAAAC CCGGACGGGC GGCGGGCCCT GGTGGCCGCG GCCTGGGGAG CGGGCGGCCC
  CTTCGCCCCT CGGCCCGGGA GAAATGCGAA TTCCGAAGGA AGGGTTCAAA GGTGACCCGA
  GGCCAGGCGG CAGGTGGGAG GGACGCGTGT CTTCCCAGCC CCTGGGAAGG TGGGTTTTTT
  K
  TTTTTTGTTT TTGCTTTTTA AGTCCTCTTC CACGAGGTTC TTTTTGTTTC CTTTGAGAAG
  AGGCCATGCA TTGCCGTGGA GGCTGGCCTC GGAGACAGAG GGAGGATTCT AGAGTGGAGG
  AATTTGTAAG GCGCTTGCTT CTATTGGAAA AGGGGGAGGG GGCACCAAGC AGAACACGAA
  GGCTGAACAG TTTTTCCATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss357502405	MGP_WTSI_3_33919775	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	T	T	T	T	G	T	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs214581480					SNP	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	T	T	T	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357502405	MGP_WTSI_3_33919775	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34075002 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	within coordinates
Fxr1	FMR1 autosomal homolog 1	Intron
Gm43077	predicted gene 43077	971 bp upstream
Rr575095	regulatory region 575095	1066 bp distal
Rr575096	regulatory region 575096	735 bp distal
Rr575097	regulatory region 575097	within coordinates
Tssr28785	transcription start site region 28785	970 bp downstream
Tssr28786	transcription start site region 28786	937 bp downstream
Tssr28787	transcription start site region 28787	927 bp downstream
Tssr28788	transcription start site region 28788	914 bp downstream
Tssr28789	transcription start site region 28789	890 bp downstream
Tssr28790	transcription start site region 28790	771 bp downstream
Tssr28791	transcription start site region 28791	743 bp downstream
Tssr32968	transcription start site region 32968	1041 bp upstream