rs214481876 SNP Detail

Summary

• ID
  rs214481876
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:19529374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCACAGAA CCATATTCTT
  CTGTCCCCGA GAATGTTACA GGTGGGGAAA AACTAGCAGA ATATTTGCTT TCAATTCACT
  CAGCCTCAGT GACACTACGT AAAACATGAC ACTCATATCG TATTTTTAAA GAATTCCTGC
  ATAGATTAAA TGAAGGAACA GACCCTAAAG CATCTAGCAA CTCATCTAGC AACTCAGTGA
  M
  TGAACTGCTG TTCCCCTTTT GCTGACTACT TGACTCAGAC ATAAGATCAA TACACCTTCC
  TCAGAAATGT TCTACCTGTA AAATTATCAT AATTACCTAA TTCAATTTTG ATACACTAAA
  TTTTGTTTAC AGAAAGTTTT TAACTGACAA GATAGTGCTC ACACAAAATA TTTACATTCA
  ACAACAACAA CAAAAATAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387895185	MGP_WTSI_13_19437073	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	C	C	C	A	C	C	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	A	A	C	C	C	A	C	A	C	C	C	C	C	C	C	A	C	A	C	A	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214481876					SNP	C	C	C	C	A	C	C	C	A	C	C	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	A	A	C	C	C	A	C	A	C	C	C	C	C	C	C	A	C	A	C	A	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387895185	MGP_WTSI_13_19437073	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19529374 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	Intron
Tssr118550	transcription start site region 118550	1745 bp downstream
Tssr118551	transcription start site region 118551	971 bp downstream
Tssr118552	transcription start site region 118552	752 bp upstream
Tssr118553	transcription start site region 118553	1882 bp upstream
Tssr121589	transcription start site region 121589	1938 bp upstream
Tssr121590	transcription start site region 121590	856 bp upstream
Tssr121591	transcription start site region 121591	within coordinates
Tssr121592	transcription start site region 121592	565 bp downstream