rs214441240 SNP Detail

Summary

• ID
  rs214441240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68952021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCCCGGCG GAGCCGCGTA CTCACCGCGA GGCGGGCGAG
  GCGGGCGAGG CGGGCGAGGC GGGCGAGGCG GGCGAGGCGG GCGACGGCGC GCACGGCGAG
  R
  GCTCCCGGGC AGCCTGGTGC GGACACTGCG AGGCGCTCGC CCGAGTCTTC AGGTGCCCGG
  CGGGGGCGGG GCCGGCGGCG CCGCAGCGAC TTTCAACCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss358314002	MGP_WTSI_3_68848610	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	G	A	A	G	A	G	G	G	G	A	G	G	A	G	G	A	G	A	A	G	G	G	G	G	A	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs214441240					SNP	G	A	A	G	A	A	G	A	G	G	G	G	A	G	G	A	G	G	A	G	A	A	G	G	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358314002	MGP_WTSI_3_68848610	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68952021 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13256	CpG island 13256			within coordinates
Gm65005	predicted gene, 65005			162 bp upstream
Rr578118	regulatory region 578118			within coordinates
Rr578119	regulatory region 578119			57 bp proximal
Rr578120	regulatory region 578120			194 bp proximal
Rr578121	regulatory region 578121			445 bp proximal
Rr578122	regulatory region 578122			655 bp proximal
Rr578123	regulatory region 578123			1820 bp proximal
Trim59	tripartite motif-containing 59			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr29529	transcription start site region 29529			388 bp upstream
Tssr29530	transcription start site region 29530			430 bp upstream
Tssr33523	transcription start site region 33523			29 bp upstream
Tssr33524	transcription start site region 33524			21 bp upstream
Tssr33525	transcription start site region 33525			9 bp downstream
Tssr33526	transcription start site region 33526			275 bp downstream
Tssr33527	transcription start site region 33527			297 bp downstream