rs214381163 SNP Detail

Summary

• ID
  rs214381163
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGAAAGG TGGAACACCC
  TTGGCCATGA AATATGTTCT CCTTACGTGC CTCAGCCTTT CAAAGTTCTG TGCATTAGAG
  TCAGGAATTC CATTCTTCCT GGAGCTAAGC GTGGGGCCAG CTGTGTAAGT AAAGTTTTGT
  TTTTCTTCTT AAACAACTTT TTCCCTCTAT TTAAAAATGT GAAGAAAAAG GCAAAAAAAA
  M
  AACAACAAAA AAAAAAACAA CAAAAAAAAA CCCACCAAAA AACCTAGATA TTCTTTTCTT
  TCATTTTTGC TCTCTTTAGT GGAAAGAAAA GGAATAAAAA GTTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAACTCA CCCTTTTCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J
ss358593254	MGP_WTSI_3_79689225	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	A	C	C	C	C	C	C	C	A	A	C	A	C	C	A	C	A	A	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J
rs214381163					SNP	C	C	C	C	A	A	C	C	C	C	C	C	C	A	A	C	A	C	C	A	C	A	A	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358593254	MGP_WTSI_3_79689225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792610 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	754 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375225	regulatory region 375225	1771 bp downstream
Rr375226	regulatory region 375226	172 bp upstream
Rr578602	regulatory region 578602	1822 bp distal
Rr578604	regulatory region 578604	1745 bp distal
Rr578605	regulatory region 578605	44 bp distal
Rr578606	regulatory region 578606	531 bp proximal
Rr578607	regulatory region 578607	1051 bp proximal
Rr578608	regulatory region 578608	1500 bp proximal
Rr578609	regulatory region 578609	1549 bp proximal
Rr578610	regulatory region 578610	1589 bp proximal
Tssr29596	transcription start site region 29596	732 bp downstream
Tssr29597	transcription start site region 29597	711 bp downstream
Tssr29598	transcription start site region 29598	213 bp downstream
Tssr29599	transcription start site region 29599	184 bp downstream
Tssr29600	transcription start site region 29600	135 bp downstream
Tssr29601	transcription start site region 29601	106 bp downstream
Tssr29602	transcription start site region 29602	646 bp upstream
Tssr29603	transcription start site region 29603	737 bp upstream
Tssr29604	transcription start site region 29604	809 bp upstream
Tssr29605	transcription start site region 29605	878 bp upstream
Tssr29606	transcription start site region 29606	911 bp upstream
Tssr29607	transcription start site region 29607	1581 bp upstream
Tssr29608	transcription start site region 29608	1599 bp upstream
Tssr33752	transcription start site region 33752	860 bp downstream
Tssr33753	transcription start site region 33753	878 bp downstream
Tssr33754	transcription start site region 33754	1493 bp downstream