rs214339142 SNP Detail

Summary

• ID
  rs214339142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:30908653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGACCCT GGTCTGCAAG
  GACGGTGCTG CCGACATTCA AGATGGGTTT CTCACCTACA TGAACTTCTC AGGAAATGGC
  CTCCCAGATA CATCCAGAAG TGTGTTTCCA TGGTGACTCC AAACCAATCA AGTTGGAGGG
  CAGGTTAGCC ATCATAGCAC TTTTCTGAAT GAATTCTGTC AAAAGGGAGA CAGAAGAGGC
  Y
  TTGGGCTCAC CTTCAGTTCC ATTATTACAG AAGAGGAGAA ACTGAGACGC AATGGGTCTG
  CCAAAATCTC GCCAACAGCT CTCCAGACAG GAGCCTCCTG GAATCTGGTA TGTAGTCGTC
  CCAACACCTC TAGATGGGAA AGGTCTCGGG ACAGCTATTA ATAATACATT TGGGGATGGA
  AGAAGAGAGT GGGCTCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357427592	MGP_WTSI_3_30753426	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214339142					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357427592	MGP_WTSI_3_30753426	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30908653 () rs orientation: forward

Symbol	Name	Function Class
Gm42199	predicted gene, 42199	within coordinates
Gpr160	G protein-coupled receptor 160	1446 bp upstream
Rr574830	regulatory region 574830	286 bp proximal
Rr574831	regulatory region 574831	892 bp proximal
Rr574832	regulatory region 574832	1407 bp proximal
Rr574833	regulatory region 574833	1522 bp proximal
Rr574834	regulatory region 574834	1854 bp proximal
Tssr28695	transcription start site region 28695	1226 bp upstream
Tssr28696	transcription start site region 28696	1442 bp upstream
Tssr28697	transcription start site region 28697	1500 bp upstream
Tssr28698	transcription start site region 28698	1510 bp upstream