rs214279558 SNP Detail

Summary

• ID
  rs214279558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109764603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATCTGA GGCTATCCTG
  AGTTACAGTG AATCCTGTTT CAGAACAAAT CCCTCAAAGT CCCATTGTCT CTCTGGCCTT
  GAAGCTCTTG AGCCCCGGAT CTAGGATACT GCTTGTTGGA CTAAAGGACT CACTAATCAC
  CTTTCCCAAC CCTGCCCAGG TATACCACCT CTAGTAAACA GACTTAACTA GTCTTTGAAG
  R
  CAGTAGTTCT TTTCAATGAA TTCCTATTTA TTTATTTTCT TATTTATCAC CGTCTGTAAA
  CAGGCTTTGA AGGCAGCATG TGTTATAAGA TGTGTTTATT CAAGCCTACC AGGGGTCCTT
  AACCTGGGGG TTGACTCAAG TAGAACATTT TAGGATCCAG GGTTATTCAT GAAACTGGGT
  GAGCTGTTTC AACTTTTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394797	CHEV_7_117308910	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214279558					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109764603 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	461 bp upstream
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	986 bp distal
Rr653201	regulatory region 653201	472 bp distal
Rr653202	regulatory region 653202	1076 bp distal
Rr653203	regulatory region 653203	457 bp distal
Rr653204	regulatory region 653204	401 bp distal
Rr653205	regulatory region 653205	402 bp distal
Rr653206	regulatory region 653206	within coordinates
Rr653207	regulatory region 653207	654 bp proximal
Rr653208	regulatory region 653208	1087 bp proximal
Tssr2367	transcription start site region 2367	470 bp upstream
Tssr2368	transcription start site region 2368	830 bp downstream
Tssr68492	transcription start site region 68492	1075 bp downstream
Tssr74253	transcription start site region 74253	521 bp upstream
Tssr74254	transcription start site region 74254	956 bp downstream