rs214264694 SNP Detail

Summary

• ID
  rs214264694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119458687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCAGTCT CCTCTCATCG
  CTGCCCCTTT GGTATCTGCA ACTCACTTCG GTTCTGGTTT TGTTCTTGTT CTGTTTTTTT
  GTTTTGTTTT TTATCTGCTT CCTTTTTAGT TTTCAAAGAA ATTTGAAATC ATTGTTCTTT
  TTTCTTTCTG CTGAGTATAT TCTCATATAT ATATATATAT ATATATGTGT GTGTGTGTGT
  R
  TGTATGTATA TATATATATG TCTGGCTACC TCGTTTTAGT TTACTTTTTT CTCTTAAGCC
  CTGGAATTCT ACAAGAGAGA TATTTTGAGA TTGAAACATT TTTGTGCCTA GACTGGAAAG
  ATGCCCACTG GGTTTGTATC TGTTTTTGGT TTTGGCTTCT TCCCAACCTC CCTGTACCCA
  ATGTGCCCCA CTTCCGCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss369847844	MGP_WTSI_6_119431744	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs214264694					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369847844	MGP_WTSI_6_119431744	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119458687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	427 bp distal
Fbxl14	F-box and leucine-rich repeat protein 14	mRNA-UTR
Rr637692	regulatory region 637692	1312 bp distal
Rr637693	regulatory region 637693	124 bp proximal
Rr637694	regulatory region 637694	1153 bp proximal
Rr637695	regulatory region 637695	1440 bp proximal
Tssr58505	transcription start site region 58505	1931 bp downstream
Tssr58506	transcription start site region 58506	332 bp downstream
Tssr58507	transcription start site region 58507	238 bp downstream
Tssr58508	transcription start site region 58508	185 bp downstream
Tssr58509	transcription start site region 58509	163 bp downstream
Tssr58510	transcription start site region 58510	212 bp upstream
Tssr62722	transcription start site region 62722	1232 bp upstream
Tssr62723	transcription start site region 62723	146 bp upstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron