rs214245728 SNP Detail

Summary

• ID
  rs214245728
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32582808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTTTAA CTCATCCATT
  TTAGCACTGT CCTTCCTATG TGTCTTGGAC AGTTTTTCTC CAGATATTCC CAGTAACAGT
  CCTGAAATGA CCTGAGAAAT GACATCCTTT CAGAAAACAC ATACCTCTTT GGCTCCACCT
  TGCTCATTTT TCTTCACTCT ATCCTCTTGT CCTGATCTCC CCCCCCCCCC ATAATAGCAG
  K
  CATAGTCTGA AATGATCTCA TTCACTGTAT TTATCCAACT TTTTTATCCA ACTTTTATTT
  TTATTTATCC AACTTTTGCA GGTGCCCATC AATGTTTTAA GCACTTTACA CCCTAACCCA
  TTTACTTTCC CACAATTCAT GAAGTAGGCA TTTTTAGTAT TTTATAGATG AGGTAGCTGC
  CATTCATATG GATAAAGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357466948	MGP_WTSI_3_32427581	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214245728					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357466948	MGP_WTSI_3_32427581	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32582808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13058	CpG island 13058	668 bp proximal
Gm66043	predicted gene, 66043	30 bp downstream
Mfn1	mitofusin 1	806 bp upstream
Rr374786	regulatory region 374786	1750 bp downstream
Rr397636	regulatory region 397636	593 bp upstream
Rr574980	regulatory region 574980	1096 bp distal
Rr574981	regulatory region 574981	316 bp proximal
Rr574982	regulatory region 574982	817 bp proximal
Rr574983	regulatory region 574983	922 bp proximal
Tssr28756	transcription start site region 28756	793 bp upstream
Tssr28757	transcription start site region 28757	873 bp upstream
Tssr28758	transcription start site region 28758	898 bp upstream
Tssr28759	transcription start site region 28759	920 bp upstream
Tssr28760	transcription start site region 28760	979 bp upstream