rs214225075 SNP Detail

Summary

• ID
  rs214225075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148251392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGTTGTT CCTATCCCTC
  TCTGGAGCAG TTTGGCAGTG ACGCCACCAG GTCTGGATAG CATTCTCTTG GGCTTAGAGA
  TGAAGGCTGT GGAGTGGCGC GCGCACACAC ACACACACAC ACACACACGC ACACACACGC
  ACACGCGCAC GCGCACACGC GCGCGCGCAC ACACACACGC GCGCGCGCAC ACACACACGC
  R
  CGTACACACA CACAGAGAAG AATAATCTTG GCTACTCTTT TTATTCATCC CTGCTTTATG
  CTAGCCTTCC TGGCTGGGCC AGGATTGGTT TTATCTACAA GCTGCCTTTC TGTGCCATGC
  TTGGGGTAGG CCGTGGGGAG GGTGTGTTAG GCTGTAGGTT AGGCTACTTG CTTTCTGGCA
  TCTCAGCTCC TTCCCAGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	ZALENDE/EiJ
ss363609387	MGP_WTSI_4_147541044	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	ZALENDE/EiJ
rs214225075					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363609387	MGP_WTSI_4_147541044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148251392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15296	CpG island 15296	1851 bp distal
Cpgi15297	CpG island 15297	within coordinates
Fbxo2	F-box protein 2	511 bp downstream
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	312 bp proximal
Rr604612	regulatory region 604612	1285 bp proximal
Rr604613	regulatory region 604613	1317 bp proximal
Rr604614	regulatory region 604614	1542 bp proximal
Tssr44601	transcription start site region 44601	562 bp upstream