rs214071123 SNP Detail

Summary

• ID
  rs214071123
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140938862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAAGGCC AGGCCTGCCC
  ACCTAGACCT CCCATCTACT CTAGGCTGGT GACATGTTCC TGCCTTGAGG AATCCTGCTC
  CATGGCTATC TGGTGCCCTT GTCCAGAGGT GCTTGATAAA TACATGTGGG GATGGCAAAC
  TGAGAGGAGT AAATCAGAGG ACGCCTGGGC GCTGGGGGTG GGGGGGGCTG GGGGGGCTGG
  T
  GGGGGAGGTG GCATGGCCCA CCTGCTTTGC CTTAGTCTTA GAAAGAGAAA CAACTTACCG
  AAGTTGGGGA GGGGGGAGTG AGAATTTAGA GGTTAAAGAA TACAGGAGAT TAGAACCCAG
  CACGCCAGGA GAGCCCACAA GTACCTTAAG CACAGTTCTG AACTGGTTGG TTATCCTCAG
  TTCATGTTGG TTGGCTGCCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57L/J	CBA/J	I/LnJ	LG/J	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	RF/J	SJL/J	SPRET/EiJ
ss363514568	MGP_WTSI_4_140767466	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57L/J	CBA/J	I/LnJ	LG/J	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	RF/J	SJL/J	SPRET/EiJ
rs214071123					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363514568	MGP_WTSI_4_140767466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140938862 () rs orientation: forward

Symbol	Name	Function Class
Gm68349	predicted gene, 68349	1225 bp upstream
Rr398649	regulatory region 398649	888 bp downstream
Rr603685	regulatory region 603685	735 bp distal
Rr603686	regulatory region 603686	1915 bp proximal
Tssr40035	transcription start site region 40035	916 bp downstream