rs214024421 SNP Detail

Summary

• ID
  rs214024421
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118830266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTATATTTT ACTATTAATA TAAAATGAAC
  ATTTCAACTC GTCGGCTTTG AAACAATTTT ATCAGCTCGT ACAAATGGTA ACATTTACTG
  ATTGATTTAA GCACCTCCTG ATAGTACGTT CTTTCTTTCT TGGCTGTTGT CTTACATAAC
  A
  CTGCAATGAA CAACATTATA CATAAAATAC CAATCTAGTT TCTTAGTCCA GATTCTTGGA
  AGGAGAATGA CTGGTAAAGA GTAGGAACAT TTCACAAAGT CTACTTTTGA GTTAGGTTAT
  AGCTTTTCTC TCTTTGGACC ACTGTATATG                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321926248	CHEV_6_118803323	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214024421					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118830266 () rs orientation: forward

Symbol	Name	Function Class
1700080F18Rik	RIKEN cDNA 1700080F18 gene	325 bp downstream
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	Intron
Rr637542	regulatory region 637542	1889 bp distal