rs213994965 SNP Detail

Summary

• ID
  rs213994965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70294743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATCAGT GAGGACAAAG
  GAACTCCCTT AACAGCAATA CACTTAACAA TACAGGTGAC TTGATTCTCA CAAATACAAT
  AGAGGACTTA CTGTCTAAGT CCATTTATAG GAAGTTCAAA AATAGGCGTT GAGAACAGTG
  GGTATCTGGG AGGAAAAGAA GGATGTTCAA AGAACATGAA GGGAAGGGGC TTTCTGGAAG
  Y
  TTGGTGATGT TCCCTGCCTG CTTCAGACAG GAGCTCCACA TGTGTGCTTG CTTCATAAAA
  ATCCATCATG CTGTACCCTT AAGAGTGCGT CATTTTCTTA CAACTACATT ATGCATTTAA
  AACAGTTGAA AACCAAGTAA TTAAATAAAA ACGACAACTC CTTAGGGTCC TCAAAAGCCA
  GTCAGAGAAC AAGTTGCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321159437	CHEV_4_70037540	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213994965					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70294743 () rs orientation: forward

Symbol	Name	Function Class
Cdk5rap2	CDK5 regulatory subunit associated protein 2	Intron
Rr593865	regulatory region 593865	899 bp proximal
Rr593866	regulatory region 593866	1028 bp proximal
Tssr37622	transcription start site region 37622	1611 bp upstream
Tssr37623	transcription start site region 37623	1636 bp upstream
Tssr37624	transcription start site region 37624	1669 bp upstream
Tssr37625	transcription start site region 37625	1713 bp upstream
Tssr42116	transcription start site region 42116	1669 bp downstream
Tssr42117	transcription start site region 42117	1701 bp downstream
Tssr42118	transcription start site region 42118	1713 bp downstream