rs213993738 SNP Detail

Summary

• ID
  rs213993738
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121998415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTGTCCCT GGTGGTCCTA GTTCCTCCTG CTGAATCCTG
  CCAATTCCGC TGAGGCCTGG CTGGTTTTGC TAGGTTGTGC CACCACTGCT GAGTGCTGTG
  K
  GCTACCCCGA CACTACAGAA TCAGACTATT CATATATTCC TGACATATTT TCAAGTGGAT
  CGAGCTGCCA CTGCTGACTC CTGTGAACTG AACTGCTGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320909588	CHEV_3_121907684	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213993738					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121998415 () rs orientation: forward

Symbol	Name	Function Class
D3Jor1	DNA segment, Chr 3, Barbara Jordan 1	170 bp distal
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	1986 bp distal
Rr584258	regulatory region 584258	1121 bp distal
Rr584259	regulatory region 584259	1124 bp proximal