rs213882806 SNP Detail

Summary

• ID
  rs213882806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52947159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCTAAGCT TTTGACTTCT TCATTTCTTC
  CTTTTTCATA TTAGCCAAAC CTCTCCGGTA ATGTTTACAT TACTTAATAG AATGCAAATA
  ATGAGATTTC TTTTTTTTAG AAGTCTGTGT TTTAATCATA TGCTTACAGG TTAATCAGCT
  R
  TTTCTCTGTG AAATGATAAC TGCCTTCGTG GCTTTTCTCT CCCTTTTTTT GAGAATTAGA
  TGAAGTCATC TATTCATACA CCCAGTGTAC TGACACGCAG TAATGAAAGA ATTTGCAACG
  GACGCCTCCT TGGCAATCCA TGTCACTTTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766597	CHEV_3_52843660	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213882806					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52947159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13160	CpG island 13160	1350 bp proximal
Gm42901	predicted gene 42901	within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6	1809 bp upstream
Rr576626	regulatory region 576626	897 bp proximal
Rr576627	regulatory region 576627	1701 bp proximal
Rr576628	regulatory region 576628	1856 bp proximal
Tssr29102	transcription start site region 29102	1779 bp upstream
Tssr29103	transcription start site region 29103	1892 bp upstream