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rs213844419 SNP Detail
Summary
  • ID
    rs213844419
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:82937070 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCATGGGAC TCACGAGGGC
TCAGGCACAC TGTGGTCGAT CTGGGGATGC AGAGCAAGTC TATTGAAGTC CCAGCTCTTG
AGCTCTTGTT TGCCTTATTC TGTATTCCCC CCCGTCCCCC GCTCTCCCCC CACCCAAGAC
CCTGAACAGT TTGTGTCAAT GGTGCAGCAC TAGTTGGCAG GTGAGGGATT CTGGTAACAC
Y
CAAAAAGCTT AGAAAGGATT TCAAAGTTCC AGGTAGAAAG AAAAACTCCT CCTCAAACGA
TATAAGCAAT AATACATTCT GTTACCATAA ATGAAGTTAC AATCAAGTAA TCAGATGTGA
TTAAACTGTT TACCTCCTAG CCTCCATTTT CAAACCCTCA AGCCATTTCT GGATTTATTC
GGATTCCTTG TCACGTTAGG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358676669 MGP_WTSI_3_82833685 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213844419 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358676669 MGP_WTSI_3_82833685 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:82937070 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Fga fibrinogen alpha chain Intron
Rr375250 regulatory region 375250 within coordinates
Tssr917 transcription start site region 917 1935 bp upstream
Tssr29661 transcription start site region 29661 1215 bp downstream
Tssr29662 transcription start site region 29662 1166 bp downstream
Tssr29663 transcription start site region 29663 1149 bp downstream
Tssr29664 transcription start site region 29664 666 bp downstream
Tssr29665 transcription start site region 29665 627 bp downstream
Tssr29666 transcription start site region 29666 591 bp downstream
Tssr29667 transcription start site region 29667 548 bp downstream
Tssr29668 transcription start site region 29668 435 bp upstream
Tssr29669 transcription start site region 29669 479 bp upstream
Tssr29670 transcription start site region 29670 523 bp upstream
Tssr29671 transcription start site region 29671 1067 bp upstream
Tssr29672 transcription start site region 29672 1170 bp upstream
Tssr29673 transcription start site region 29673 1198 bp upstream
Tssr29674 transcription start site region 29674 1247 bp upstream
Tssr29675 transcription start site region 29675 1257 bp upstream
Tssr29676 transcription start site region 29676 1267 bp upstream
Tssr29677 transcription start site region 29677 1284 bp upstream
Tssr29678 transcription start site region 29678 1363 bp upstream
Tssr29679 transcription start site region 29679 1407 bp upstream
Tssr29680 transcription start site region 29680 1430 bp upstream
Tssr29681 transcription start site region 29681 1532 bp upstream
Tssr29682 transcription start site region 29682 1555 bp upstream
Tssr29683 transcription start site region 29683 1598 bp upstream
Tssr29684 transcription start site region 29684 1623 bp upstream
Tssr29685 transcription start site region 29685 1664 bp upstream
Tssr29686 transcription start site region 29686 1730 bp upstream
Tssr29687 transcription start site region 29687 1828 bp upstream
Tssr29688 transcription start site region 29688 1852 bp upstream
Tssr29689 transcription start site region 29689 1878 bp upstream
Tssr29690 transcription start site region 29690 1908 bp upstream
Tssr29691 transcription start site region 29691 1954 bp upstream
Tssr29692 transcription start site region 29692 1970 bp upstream
Tssr33800 transcription start site region 33800 1339 bp downstream
Tssr33801 transcription start site region 33801 1684 bp downstream
Tssr33802 transcription start site region 33802 1820 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory