rs213826479 SNP Detail

Summary

• ID
  rs213826479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60380207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAACCAC TACCCCAATT
  CTGAGAAAAC CTGCTAGCTT ATTAACTGTC CTTTCCTTTC CCTTCTCCTT TCTTCAGTAG
  TCTGATGTGT ACCAAAGTCA TACTCCAATA ACTTTAATTA GATTTATAAA AGCAACTTTA
  TGTCCCACGT GTCAGTTCCA CCATCTCCCA CATAGGACAG AATTTTTTTT TCTGGTTCTG
  Y
  TTTTTTCTCT AAGTATCATT TAGGCATAAG GAGCTGTTTG CTCACACGTG AGCATTGCTT
  GACAGAGTTT ACACCTCAAT AGCAGGTCTT CTCTAAACGT AAGTAAATAT GTACATGCAT
  TAATTATATA TGAAGAGATG CACAAACTAT AGCTCAGTCT CCAAGATTAT GAGGGCCTTG
  TGAATCATTT GTCTTCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358136985	MGP_WTSI_3_60276708	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213826479					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358136985	MGP_WTSI_3_60276708	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60380207 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	44 bp upstream
Rr397689	regulatory region 397689	337 bp downstream
Rr577397	regulatory region 577397	within coordinates
Rr577398	regulatory region 577398	304 bp proximal
Rr577399	regulatory region 577399	813 bp proximal
Tssr29248	transcription start site region 29248	580 bp downstream
Tssr29249	transcription start site region 29249	553 bp downstream
Tssr29250	transcription start site region 29250	178 bp downstream
Tssr29251	transcription start site region 29251	120 bp downstream
Tssr29252	transcription start site region 29252	99 bp downstream
Tssr29253	transcription start site region 29253	45 bp downstream
Tssr29254	transcription start site region 29254	within coordinates
Tssr29255	transcription start site region 29255	6 bp upstream
Tssr29256	transcription start site region 29256	21 bp upstream
Tssr29257	transcription start site region 29257	36 bp upstream
Tssr29258	transcription start site region 29258	276 bp upstream
Tssr29259	transcription start site region 29259	312 bp upstream