rs213811202 SNP Detail

Summary

• ID
  rs213811202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29525157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTTAAGG AAGAAGCCAC
  AATTCTAATT AATTAATACC ACGGTATCTG TCAGCAATCT AAGGCTTTAA ATGTAGAGGG
  TAAACAGTAT GTCTACAATG TATATATTTT ACTTGCTAGC TAAAGTGAAC AATGGGGTGT
  GTGTGTGGGG GGGGGGGGGG TAAACAAGAT GGCTGGCAAG CCTGACAGCC TTAGTTCAGT
  Y
  CCTGGGCCAG GCATATGAAG GAGAGAACTG GCTGAAGTTG TCCTCTGACA TACTCATGCT
  TATGTGTACC CACAGATGTA CACACAAAAT AAATGTAATA ACATTTTAAT TTAACAATTC
  ATTCAGAATA TTTGTGTATT AAAAATATCT CTAGGACCGA AGAGATAGCT TGGTAGTTAA
  GAGCATCTGC TGTTCTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367815895	MGP_WTSI_6_29475158	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213811202					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367815895	MGP_WTSI_6_29475158	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29525157 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17238	CpG island 17238	939 bp proximal
Gm26627	predicted gene, 26627	within coordinates
Irf5	interferon regulatory factor 5	1467 bp upstream
Rr627583	regulatory region 627583	450 bp distal
Rr627584	regulatory region 627584	151 bp proximal
Rr627585	regulatory region 627585	274 bp proximal
Rr627586	regulatory region 627586	977 bp proximal
Rr627587	regulatory region 627587	1561 bp proximal
Tssr55266	transcription start site region 55266	932 bp upstream
Tssr55267	transcription start site region 55267	1507 bp upstream
Tssr55268	transcription start site region 55268	1526 bp upstream
Tssr55269	transcription start site region 55269	1532 bp upstream
Tssr55270	transcription start site region 55270	1583 bp upstream
Tssr60097	transcription start site region 60097	1302 bp downstream
Tssr60098	transcription start site region 60098	1374 bp downstream