rs213740097 SNP Detail

Summary

• ID
  rs213740097
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109335771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAAGAGA GAAAGAGAGA AGGGTGTTGT TGAATGCCTG
  TAATTCAAGC ATTTAGAGCC AAGACAGGAA CATGTCTAGT TCAAGGCTAG CCAATGTTAC
  TTAACAAGCA AACAAACAAT TCTGCCTCAA AAAAAGTCTA TATTCAATCA AACAAAAAAA
  A
  TTTTTTTTTG AAATAGCATC TCACTATATA GCTCTGGCTG TCCTGGAACT CCCTACGTAG
  ACCAGACTAG CCTCAAACTC AGAGGTCTAC CTGTCTGTCT CTAAAATGCT AGGACTAAAG
  GTATGTGCCA CCACACCCTT TCTCCAACCA ATGTGTTTCA AAACAGAACC TTGAGCTGGG
  CACAGAGATA CAAATCTATT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321254130	CHEV_4_109151179	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213740097					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109335771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14574	CpG island 14574	1556 bp distal
Rr597332	regulatory region 597332	1163 bp distal
Rr597333	regulatory region 597333	1724 bp distal
Tssr42767	transcription start site region 42767	1966 bp upstream
Tssr42768	transcription start site region 42768	1909 bp upstream
Tssr42769	transcription start site region 42769	1847 bp upstream