rs213729719 SNP Detail

Summary

• ID
  rs213729719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:46383484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGAAAC GCTAGCGCAC
  CTGACAACCA CTGTGTCTGA TAATCCCCCT GCCTCTCACC TGGGCACTGC AAACATCAAA
  GCATCTCGCC TGCTTTGTCA CCCCCCTTTC TTCTTTACCT TGACTAACTA TAATTTATAA
  TCACAAAAAT AACTGAAATC CCATGGCCAT TTCTGGTACC GGTTTGTCCG GCCCCACCCA
  R
  ATACAGTTCA CTAAATTGCC CCTCCAGCTC ACACCCAAGG AAACTGTCCT TTTTCACCGG
  TGGACCAGCC ATCGCCTTCC GCACCCTGAG TTGCCGAGCC AATCCCTACA GCTCTACTGC
  ACGGCACCGC CCCTTACAGA AGGGAAACAC TATGGCGACC GGAAGAGCGA CAAGCGCCGG
  AGCCAATGAC TGCGGAGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402595841	MGP_WTSI_19_46469535	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213729719					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402595841	MGP_WTSI_19_46469535	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46383484 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Actr1a	ARP1 actin-related protein 1A, centractin alpha			Intron
				Noncoding-Transcript-Variant
Gm59146	predicted gene, 59146			48 bp upstream
Rr405999	regulatory region 405999			within coordinates
Rr406000	regulatory region 406000			638 bp upstream
Rr406001	regulatory region 406001			1581 bp upstream
Rr548727	regulatory region 548727			within coordinates
Rr548728	regulatory region 548728			59 bp proximal
Rr548729	regulatory region 548729			683 bp proximal
Rr548730	regulatory region 548730			1361 bp proximal
Rr548731	regulatory region 548731			1696 bp proximal
Rr548732	regulatory region 548732			1804 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling			1851 bp upstream
Tssr156751	transcription start site region 156751			308 bp upstream
Tssr156752	transcription start site region 156752			329 bp upstream
Tssr156753	transcription start site region 156753			1840 bp upstream
Tssr156754	transcription start site region 156754			1964 bp upstream
Tssr159650	transcription start site region 159650			677 bp downstream