rs213717020 SNP Detail

Summary

• ID
  rs213717020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135665561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTAGCAT GTTCTGGTTT
  TGTTTTTCAT TTTTTTATTG CTGGGGATAG ACCTCAGGGC CTAGGCATGC TCAGGCAAAC
  ATTCCACCAC TGAACTACAG CCTCAGCTCT TGTTTTTTAA GCTGAGTTCT CTATGTAACT
  CAGGCTAATC TCAGCCTGTG GCTCTCCTGT GTTGTATTAA GTATTTAATC TCAATTGGGG
  R
  TTTCTACCCC ACTTTTGATC ATTCAGTTCC CAGATAAAAG ACAGAAAACT TTCATATTTA
  TAATAAGCCT TTAATGCACT AGAGCTGGGC AGATATCTAC CCTCTATGCT ATTTTGTCTA
  CTTTTCCATC AATAACCCCC AAGGTATAAC TTGCCATTTC CATCTGGTCA GCCCTCATGG
  CTATGTTGTT GGTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353523	CHEV_4_135494165	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213717020					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135665561 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fuca1	fucosidase, alpha-L- 1, tissue			Intron
				Noncoding-Transcript-Variant
Rr602205	regulatory region 602205			865 bp proximal
Rr602206	regulatory region 602206			899 bp proximal