rs213682325 SNP Detail

Summary

• ID
  rs213682325
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132781550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaGCTATAT CCAGTTGCTG CTGGCATTGG
  GCAGGTGCCA GCTCCACATA CACCTCCATG GCAGTGGGCA CACCTTCCTC TTCCTCTAGG
  GACAGCGACT CAGACTTGTA CAGTTACCAG CCCCAGAGCT GTCTCTCTGC TTCATAAGAT
  R
  TCACTCCTCA TTTTTAGGGG TGAGAAAATG GGGAAGAATA TATAGGCTGT AGACAGGATA
  AGGAGTTGAG CCAAGGCCAG GTTCCCTCCA CTTTCTCTGG TGTGCTGTTT GTGCACACGT
  GTGAGTATCT AGACTTGCAA AGATACTGCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321338392	CHEV_4_132610154	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213682325					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132781550 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Rr377217	regulatory region 377217			within coordinates
Rr601173	regulatory region 601173			823 bp proximal
Tssr39445	transcription start site region 39445			861 bp upstream
Tssr43733	transcription start site region 43733			1931 bp downstream