rs213647087 SNP Detail

Summary

• ID
  rs213647087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129023773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGAAAG ACCTTGCAGA
  CATGGGGGTG GGGGAGCGGC TACTTTCTAG CCATTCCGAT AGGGGGCACT CCACCTCCAT
  GAGGAAAGCT GATAAGAACG ATCCAACTAT GATTTGGCCG AGGCTAACTT ACCAGGGTCT
  TTGTTCTTTT AACTTTATCA AATACTTTCT AGGATAGCAG TGATCAGTCT GTCAAAGGGA
  Y
  AGCACTGGGC TGGAGAGATA ACTGATCGCT CTTTCAGAGG ACCTGAAGTC AGTTCCCAGC
  ACCTACTCCG TAGCTAACAG TCCTCTGTAA CTCCAGTTCC AGGGGAACCT GACACCCTCT
  TCTGGCCTCC TCCGACACAG TATACATATG CTACACAGAC ATACATGCAG GCAAACCCAC
  ACATTTTTTA AAAAAGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355633819	MGP_WTSI_2_129007589	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213647087					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355633819	MGP_WTSI_2_129007589	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129023773 () rs orientation: forward

Symbol	Name	Function Class
AI847159	expressed sequence AI847159	1180 bp upstream
Gm14029	predicted gene 14029	within coordinates
Gm39932	predicted gene, 39932	750 bp upstream
Rr367309	regulatory region 367309	1559 bp downstream
Rr564859	regulatory region 564859	1111 bp distal
Rr564860	regulatory region 564860	128 bp distal
Rr564861	regulatory region 564861	109 bp proximal
Rr564862	regulatory region 564862	830 bp proximal
Rr564863	regulatory region 564863	1507 bp proximal
Rr564864	regulatory region 564864	1950 bp proximal
Tssr26188	transcription start site region 26188	1194 bp upstream
Tssr26189	transcription start site region 26189	1182 bp upstream
Tssr26190	transcription start site region 26190	1924 bp downstream