rs213620598 SNP Detail

Summary

• ID
  rs213620598
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79104152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTCTAGG AAAGGGAAAG
  CTCCCTAGGC AGCTGTCATC ATGAAGGCCA AATTCCTCGG CAGAAGAGCT GAAGAGAAGA
  TAAAGGATGT TGGAGGTACC TGTGCTCTGG TGGCTTGAAG CCACCCAGGG GGTTAATTAA
  ATGCTAATAT TAAAAAAAAT CTCTATGGGA ACACATGTTG TAAATCGTCC TGGAATTTTT
  K
  ACCTCATCCA ACTATTGGTT GCTGTGGGGG TTTTTTTTTG TTTGTTTGTT TGTTTTTTTT
  TTTGAGACAG GGTTTCTCTG TGTAGCCTTG ACTATCCTGG AACTCACTGT GTAGATCAGG
  CTGGACTCGA ACTCACAGAG TTCGGACTGC CTCTGCCTGG GATTAAAGGG TTGCACCGCT
  CCTTCCTGTT CTTTAGAGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759314	CHEV_11_79026828	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213620598					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79104152 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	83 bp downstream
Gm74268	predicted gene, 74268	1267 bp downstream
Rr402771	regulatory region 402771	741 bp upstream
Rr452198	regulatory region 452198	402 bp proximal
Rr452199	regulatory region 452199	796 bp proximal