rs213579175 SNP Detail

Summary

• ID
  rs213579175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106717666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATTTGCC AATGATCACC
  CGGACGGTGG GAAAATTAAA TATAAAATGA AATTTCAGTG GAGCTGGGGA GATGGCTCAG
  CAGATAAAGG TCCCTGCCTC CAAGGCTAAT GACCGGAGGT CAAGCTCTGG AACCCACAGG
  GATGGGAGCA GAGAAGCAAC TCCCACAAAT TGCCCTTTCA TATCCACGTG TGTAGCATGG
  Y
  TTGAGCATGC ACACACACAC ACACACACAC ACACACACAC ACACACGCAC ATTAACACGC
  ACATGCACAT GCACACCATA GTAATCAGAG CACTAATTGC TCTCCCAGAA GACCTGGGTT
  TGAGTCCACA TGGTAGCATG GCTTGAGCAT GCACACACAC ACACACACAC ACACACACAC
  ACGCACATTC ACACGCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362746684	MGP_WTSI_4_106533074	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213579175					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362746684	MGP_WTSI_4_106533074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106717666 () rs orientation: forward

Symbol	Name	Function Class
Gm12746	predicted gene 12746	1951 bp upstream
Gm69305	predicted gene, 69305	1014 bp upstream
Gm69780	predicted gene, 69780	857 bp upstream
Gm70282	predicted gene, 70282	within coordinates
Rr376973	regulatory region 376973	within coordinates
Rr596849	regulatory region 596849	618 bp distal
Rr596850	regulatory region 596850	273 bp distal
Rr596851	regulatory region 596851	1912 bp proximal
Tssr38192	transcription start site region 38192	714 bp downstream
Tssr42651	transcription start site region 42651	1080 bp upstream
Tssr42652	transcription start site region 42652	873 bp upstream
Tssr42653	transcription start site region 42653	849 bp upstream