rs213576347 SNP Detail

Summary

• ID
  rs213576347
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144038210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGCTGCA TATGTATCAA
  AAGATGGCCT AGTCAACCAT CACTGGAAAG AGAGGCCCTT TGGACTTGCA AACTTTATAT
  GCCCCAGTAC AGGGGAACGC CAGGGCCAAA AGGGGGAGTG GGTGGGTAGG GGATTTGGGG
  GGTGGGTATG GGGGACTTTT GGGATAGCAT TGGAAATGTA AACGAGGAAA ATACCTAATT
  W
  AAAAAAAAAA AAAAAAGAAT GCTAAAGAGG AGCCAGGTGT GGTGGCACAG GCCTTTAATC
  CCAGCACTCA GGAGGCAGAG ACAGGTGGAT TTCTGAGTTC CAGGCCAACC TGGTCTACAA
  AGTGATTTCC AGGACCCTGT CTCAAAAAAA CAAACAAACA ATCAACAAAA AAATGCACCA
  TAACCTGGTC AGCTATTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	DBA/1J	I/LnJ	NZO/HlLtJ	NZW/LacJ	SPRET/EiJ
ss363581146	MGP_WTSI_4_143901543	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	DBA/1J	I/LnJ	NZO/HlLtJ	NZW/LacJ	SPRET/EiJ
rs213576347					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363581146	MGP_WTSI_4_143901543	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144038210 () rs orientation: forward

Symbol	Name	Function Class
Rr377339	regulatory region 377339	760 bp upstream
Rr604223	regulatory region 604223	1339 bp distal
Rr604224	regulatory region 604224	1045 bp distal