rs213576142 SNP Detail

Summary

• ID
  rs213576142
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106909366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCCAAAG CCCCAAAGGC
  TCCTCAGCTG TGGCAGCTGA GTCCCCAGGC CCTGTGCTGA GTCTTCTCCA ATCCAGGGTC
  TGGCTTCTGG CTGGTGCTCA GTGGGTGTTT GCAGAGGAAC ACTGAAGGCT GCTGAGTCAG
  TCAGCCCTGG AACAGGCGCA GGACGACTGT TCCCAGTGTT CAGGCAGGAC CTTAGGTGTG
  G
  GGGGGGGGGG GGGCGGGTGG CCTTGGTGAA TATCTGTTAC TGCAGATCCA TAGGAGACTA
  GTTCTTGTCA GTGGCAAGAC TAGGAACTCC TGGGGACAGG GACTGTGGCT CCCAGCTTGA
  GTCTCCCAAC CCCAGCACAG TACCTTGCTC ACAGTACATA GTACTAGAAC AGTGTGAATG
  GCTAAGTTGC CAGGGATGTA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NON/ShiLtJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss362750634	MGP_WTSI_4_106724774	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NON/ShiLtJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs213576142					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362750634	MGP_WTSI_4_106724774	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106909366 () rs orientation: forward

Symbol	Name	Function Class
Rr596913	regulatory region 596913	510 bp proximal
Rr596914	regulatory region 596914	1214 bp proximal