rs213564100 SNP Detail

Summary

• ID
  rs213564100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113053246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCCAGGG CGGTCCTCAG
  AAGCCAGGAG GCAGCAGAGA ACTCCCAGAA AGGTATTGCA ACACTCCCCT CCCCCCTCCG
  GAGAAGGGTG CGGCCTTCTC CCCGCCTACT CCACTGCAGC TCCCTTACTG ATAACAACTC
  AGAGCGACTT TGGGAGAGCA AGTGCTTCCT GCCTCCAAAA CAGCCCAACT GAGCCCTCGC
  Y
  CCTTCCCTCC ACTCCCCGGA GTGCGCGATG GAGGTCTGGC TCAGCACGCC CCTCTTGAGG
  CAACTCAAGT CGGAAACGTG CTTGCACCCG CCCCGCAGCC GCTCAGCCCT ACTGCCCGTC
  CCCGCCCCCA GCGCGCGCTT CCTGCCACGT TGCGCAGGGG CGCGCGGCCA GACTCTGCGG
  CGCGGGGCCG AGGGGAGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369705666	MGP_WTSI_6_113026279	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213564100					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369705666	MGP_WTSI_6_113026279	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113053246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17829	CpG island 17829	within coordinates
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano	within coordinates
Rr379953	regulatory region 379953	within coordinates
Rr407325	regulatory region 407325	within coordinates
Rr636448	regulatory region 636448	1643 bp distal
Rr636449	regulatory region 636449	within coordinates
Rr636450	regulatory region 636450	103 bp proximal
Rr636451	regulatory region 636451	1017 bp proximal
Rr636452	regulatory region 636452	1029 bp proximal
Rr636453	regulatory region 636453	1365 bp proximal
Setd5	SET domain containing 5	1080 bp upstream
Tssr58166	transcription start site region 58166	1069 bp upstream
Tssr58167	transcription start site region 58167	1102 bp upstream
Tssr58168	transcription start site region 58168	1170 bp upstream
Tssr58169	transcription start site region 58169	1282 bp upstream
Tssr58170	transcription start site region 58170	1346 bp upstream
Tssr62428	transcription start site region 62428	32 bp downstream
Tssr62429	transcription start site region 62429	896 bp downstream
Tssr62430	transcription start site region 62430	952 bp downstream