rs213537416 SNP Detail

Summary

• ID
  rs213537416
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:81844991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGCtatat aagcatgcat gcatgcatgt
  atgtatgtat gtgtgtgtat atatatatat gtatacacac acacatatat atgcataact
  gcacacatat acacatgcat gctgtcacat atatacaggt acatgcatgc ctatgcatat
  W
  tacatgttta taaatttatg catgaatgca tacaagcata caGAAGCAAG GTTAAGTAAC
  TGGCAGGGGT AGAAGAAGCT TGGCTGTCAG AAGTCATTGG AAGGGAAGGG ATACAAGACA
  GGACTTTCTA GAGTTGGGAT CTTAAGATGC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320817211	CHEV_3_81741606	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213537416					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81844991 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctso	cathepsin O			Intron
				Noncoding-Transcript-Variant
Rr578733	regulatory region 578733			1299 bp proximal