rs213535657 SNP Detail

Summary

• ID
  rs213535657
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88741178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGTCCAG GCTGGTCTTG
  AACTCCTTTC AACACCTGCC AAATGCTAGT GTTACAGTCA TAGACCACTC TGCCTAAAAA
  GTGTATTTTT TAAGTTAGAG AAACTACTAG AAAAGATGAA TGAATTGATT TTTAAAGTTT
  CCTGATTATT TTTCCTAAGC ATAATTTGTA TCATCACTGA AACTCAAAAC TTTTTTTTTT
  K
  AAATTATTAT ACTCAATTGG GAAACTGCTT TTATACTACT TGCAAGGAAA AGACCACTGC
  ATTTTTAGTT AACCTGGTAT TTGGAGGCTA AAGAGAGATA ACTGGAAATT AAAGGTTATA
  CTACAAAAGA CATGATGATT TTAAACAGGA AGGTATTCGT GGTACAGTGT ACCATAGCCA
  ACTTAAAACA AATGTCAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss358802531	MGP_WTSI_3_88637793	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	G	T	G	T	T	T	T	T	T	T	G	T	G	T	T	T	T	T	G	T	G	G	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs213535657					SNP	T	T	T	G	G	T	G	T	T	T	T	T	T	T	G	T	G	T	T	T	T	T	G	T	G	G	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358802531	MGP_WTSI_3_88637793	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88741178 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	1324 bp upstream
Gm64348	predicted gene, 64348	382 bp downstream
Gon4l	gon-4 like	1353 bp upstream
Rr375322	regulatory region 375322	1779 bp downstream
Rr375323	regulatory region 375323	1083 bp upstream
Rr397779	regulatory region 397779	1067 bp downstream
Rr579902	regulatory region 579902	1396 bp distal
Rr579904	regulatory region 579904	732 bp distal
Rr579905	regulatory region 579905	705 bp proximal
Rr579906	regulatory region 579906	844 bp proximal
Rr579907	regulatory region 579907	1270 bp proximal
Rr579908	regulatory region 579908	1286 bp proximal
Rr579909	regulatory region 579909	1371 bp proximal
Tssr34067	transcription start site region 34067	1300 bp upstream