rs213500778 SNP Detail

Summary

• ID
  rs213500778
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54495085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGTGAGC GGCTCGGCTC
  GCCAGGCTCC TCCCTAGGAA AATGTGGCTT TCCTATACAT CACTCGATTC AAAACAGATG
  GGGAACAACC ATCTGCCAGA AGGAAAGGAA AGATGTAGCG CATATTATAA TTACGGGATT
  CAGACAAACA AGGGGAAGGG GAAGATGACT TTAAAGCAAA TAGGCAGTCC CTTCTATGAA
  M
  GCTTTCTCTC CCGAGTCCAG CATTCTCGGA AGAAAATGGC GTCATCTCAG AAGCATCAAA
  CCTCTCAGTA TAATGCCTTC TCTATCCCAG TGCCTGCTGC CCTCCTCTTG GTTATAAGTC
  CCACGCTCCT ATGCCACCAG GCTCTGGAGA AGGCTTCTGT GACTCAGATT TGAGTCAGTC
  ATCCTAACCA GTTCGTTTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772027	CHEV_3_54391586	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213500778					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54495085 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576811	regulatory region 576811	within coordinates
Rr576812	regulatory region 576812	584 bp proximal