rs213498624 SNP Detail

Summary

• ID
  rs213498624
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148717501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTAGGAC AAAGGGATAA
  AGCTCCAACA AGACTCTGAG TTGGTGCAGA ACAGACGCTG CTACTCCGTG CGACTTTTAC
  CCAAATGCGA GCGTTAGGGA CCCGCCCGCC TCTCCTGGCT CCTCCTTTTC CGGCGGCCAC
  CCTCCCTTTT CCGTCTGCCC CCTAGCGGGC CCCGCCTCCT CTTCCGAACG GCCCCGCCCT
  S
  CCTCTGCTTC AGTCAGCTGC TAGTCTGTTC TTGCCTTGTA GGTCAGATAC CTCTTAAAGA
  GCTGCCAGAT TCCCATTCCC TGCTGAGCCT CCCCTCCCCC ATCCCTGCCC CGCCTCTCCC
  TTCCTTCTTC ACTCTTAGCT TTCTGTTCTT ACCAGTTCCT CTTCTGTGCC CTTTTCCACA
  GCTTCCCCTT TTACTCCAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356083084	MGP_WTSI_2_148701317	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	G	G	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213498624					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	G	G	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356083084	MGP_WTSI_2_148701317	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148717501 () rs orientation: forward

Symbol	Name	Function Class
Cst3	cystatin C	Intron
Rr374041	regulatory region 374041	within coordinates
Rr566976	regulatory region 566976	28 bp distal
Rr566977	regulatory region 566977	within coordinates
Rr566978	regulatory region 566978	1498 bp proximal
Tssr20682	transcription start site region 20682	410 bp downstream
Tssr20683	transcription start site region 20683	325 bp downstream
Tssr26688	transcription start site region 26688	137 bp upstream
Tssr26689	transcription start site region 26689	93 bp upstream
Tssr26690	transcription start site region 26690	23 bp downstream
Tssr26691	transcription start site region 26691	42 bp downstream