rs213497059 SNP Detail

Summary

• ID
  rs213497059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150171553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT AACCTCCTAG AGTGGCTCTG
  R
  GAGGCAGAAG GCAACGATTG GGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321428024	CHEV_4_149461205	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213497059					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150171553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15345	CpG island 15345	within coordinates
Gpr157	G protein-coupled receptor 157	407 bp upstream
Rr398878	regulatory region 398878	35 bp upstream
Rr605170	regulatory region 605170	1427 bp distal
Rr605171	regulatory region 605171	1509 bp distal
Rr605172	regulatory region 605172	within coordinates
Rr605173	regulatory region 605173	617 bp proximal
Rr605174	regulatory region 605174	929 bp proximal
Rr605175	regulatory region 605175	1961 bp proximal
Tssr40369	transcription start site region 40369	417 bp upstream
Tssr40370	transcription start site region 40370	550 bp upstream