rs213494722 SNP Detail

Summary

• ID
  rs213494722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:65692983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCACAGC AGGGACATTT
  GATCTGCAGG GTGATTGATA AGTGCTAGAG AGGGGCAGCC ATCCTTCCCT CCCTCCCTCT
  TCTCTCCTCT CTCTTTCCCT CCCTCCTTGC CAGAAGCGCT GCTGGGTAGC GAGCTGCTCC
  AGTAAGGATC TTCCTACCCT GGGGTGGGTG GGTGGGGGGA TACCGCCTGC GCTCCTCGCT
  R
  CTGTGCCACT CACTGCACGG CCCGCCCGAC TGGTACCTAG GAGGTGCTGG CTTCTGAGCC
  TCTCAGAGAC GCGGATGCTG CGGGAGCCTC CAGGGGAAGA TCGAGGCGGA GCGCTCTCTC
  TGGGTAAGTT CGGAATACTC GGGAATGCCG TGGCAATGAG ACCCACGAGC CGGGTTTCTT
  TGGCCTCAAA GTGGGTATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403673368	MGP_WTSI_X_63902552	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213494722					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403673368	MGP_WTSI_X_63902552	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65692983 () rs orientation: forward

Symbol	Name	Function Class
DXMit87	DNA segment, Chr X, Massachusetts Institute of Technology 87	1925 bp distal
Gm61789	predicted gene, 61789	within coordinates
Rr691649	regulatory region 691649	49 bp distal
Rr691650	regulatory region 691650	within coordinates
Rr691651	regulatory region 691651	93 bp proximal
Slitrk2	SLIT and NTRK-like family, member 2	mRNA-UTR
Tssr161127	transcription start site region 161127	within coordinates
Tssr161128	transcription start site region 161128	59 bp upstream