rs213472152 SNP Detail

Summary

• ID
  rs213472152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114815489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGCAGAC TCTGACTAGT
  GTGCTTGGTG GTGGTGGAGT TGTTGTCGGT GGTGGTGGGG AGGTGGTGGT GATGGTGGTA
  GTGGTATGAA ATCTTCTGGG GTCTCGGAAG CTCTGCCTTT ATTTTTTAAA ACCTAGGGCA
  GTGGAGTTCC CCATTTACTG CTGCCTTCCT TCCTTTTTTC TTGCTGTAAA AAGACATCAT
  R
  ACCAAGGCAG CTTACAGTAA AAAGAGTTTA TTGGGGCTTA TAGTTTCAGA CATTAGAGTC
  CATGTCCATC GTGGCAGGGA ACATGGTAGC AGGCAGGCAG ACATGGCGCT GGAATAATAG
  CTGAGAGCTC ACTTCTTGAT CTACAAACAC AAGGCAGAGG GAGAGCTAAC TGGGAGTGTC
  TGGGCGTTTG AGACCTCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914847	CHEV_6_114788546	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213472152					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114815489 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			12 bp downstream
Rr636840	regulatory region 636840			400 bp proximal
Rr636841	regulatory region 636841			1751 bp proximal