rs213460109 SNP Detail

Summary

• ID
  rs213460109
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27209111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAATTAC AGAGAATGAT
  GAACCACCAG GTGGGTGCTG GAAATCAAAC TCACGGCCTA TGTGTGAGAA ACAAACGCTT
  TAAACCACTG AGCCAACTCA CTTTAAGCCC AAAATCTACT TTAAAACCAA AAGAACTTCT
  TGACAGCCTA AGCAGTTCGA CAAGTCTACG GTGAGTTCAT AGAATGAGTA AAACAATCTA
  K
  AGTTTTGTCT GTCTGGTTGG TTGGTTTTTA GGGTTTTTTG CCTACCAGTA TCTATGGCCT
  GCCAATCACT AGAATTCCGC ACTAGCCTTT GGAGTGGAAG AAAGGAAAAA TCGGCCTGGA
  CCTTGCCCAG AGAAGTGTGC TTGCAATTTA AACTGGGGTG TGTCTGGCAT TCCAAGCATT
  CTCCTCACTA AAGTAGAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357338610	MGP_WTSI_3_27053884	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213460109					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357338610	MGP_WTSI_3_27053884	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27209111 () rs orientation: forward

Symbol	Name	Function Class
1700125G22Rik	RIKEN cDNA 1700125G22 gene	within coordinates
Cpgi13018	CpG island 13018	755 bp distal
Ect2	ect2 oncogene	1140 bp upstream
Rr374716	regulatory region 374716	within coordinates
Rr574351	regulatory region 574351	1547 bp distal
Rr574352	regulatory region 574352	1119 bp distal
Rr574353	regulatory region 574353	921 bp distal
Rr574354	regulatory region 574354	1776 bp proximal
Tssr28601	transcription start site region 28601	931 bp downstream
Tssr28602	transcription start site region 28602	902 bp downstream
Tssr32836	transcription start site region 32836	1120 bp upstream
Tssr32837	transcription start site region 32837	1107 bp upstream
Tssr32838	transcription start site region 32838	1086 bp upstream