rs213448355 SNP Detail

Summary

• ID
  rs213448355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5497247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCACTC CCCAGTCTGC
  TCCAAAAGCT CTTTCTTCAT TGCGGCTGCC CTCCTTCCAA AAAGCAGCCT TTGTCACTAG
  CAGGCACCAG TAGCATATTT TAGTTATTTG GGCTCTTTCA TTTCCCAGAG GCTCAGTGCA
  TCCTACCCTA CTTTGTTACT GCCCAATATT GACCTCCCTA ATGACTGCTG TTGAAACATG
  Y
  TAGCGGGTCA TAACACTCTC ATCCTAACCT CTCTCGTCCT CCCGTTCACT CTAAATGGAC
  TGTAGAATGA AGCCAGTGTT TAGGGACGCT GTAACGACTT GGTTGCAAAT GCAATGTAAT
  GGGAACTACT AATAGTAATA AACTGCAAGG GCAGTTTGTT ATCCAAGGCA CCCTTAGCCT
  TCGACCCTTG CATATGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729294	CHEV_6_5447247	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213448355					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5497247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17131	CpG island 17131	607 bp distal
Pdk4	pyruvate dehydrogenase kinase, isoenzyme 4	969 bp upstream
Rr378865	regulatory region 378865	within coordinates
Rr626152	regulatory region 626152	448 bp distal
Rr626153	regulatory region 626153	1469 bp proximal
Tssr59753	transcription start site region 59753	1395 bp upstream
Tssr59754	transcription start site region 59754	1366 bp upstream
Tssr59755	transcription start site region 59755	1315 bp upstream
Tssr59756	transcription start site region 59756	957 bp upstream
Tssr59757	transcription start site region 59757	931 bp upstream