rs213440300 SNP Detail

Summary

• ID
  rs213440300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107493183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGGGTC TTCTGCCCCC
  TGAGCAGCAG CCACCAAGAT ACATTCCCAG CTCAGTCTGT ACGGCAGAGG TGAGAGGGGA
  AGAGCTCGGT GGCCCCCTTC TTCAGAAGGG AAACTGAGGC TCCTTGGTCA CCCAGCCATG
  CTAGATGGCA TACTCAGGCC TTCTCTGTCA TCTAGAGACA CCTCAGTTAC CCCAATATGT
  R
  AGTCCTTCCC AAAGTCGAGA AGACAGTTGC TCTTCTATGT TCTGCTGTTC TGGGAGTCCG
  GGGCCCTCTG GTGTCGTAGC CAATGAAACA CCAGCATGGT TCACAGGGTC ACACCCGGGC
  CCCTGCAGTC GTCTTGCAGT ATTACACAGT CTTCATCCAT CCCACACTCC TGGATTGGAG
  GCAGCTCCTG GTTGTCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321249699	CHEV_4_107308591	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213440300					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107493183 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	925 bp downstream
Rr597028	regulatory region 597028	1168 bp distal
Rr597029	regulatory region 597029	1781 bp proximal
Rr597030	regulatory region 597030	1877 bp proximal