rs213408273 SNP Detail

Summary

• ID
  rs213408273
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95903220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCC CATGCCCGCC CCCGCCGCAC
  S
  GGCCCCGGCC ACCGCCGCTG ACGTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss640172448	FVB_NJ_3_95799831	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	C	C	G	G	C	G	C	C	C	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs213408273					SNP	G	G	C	C	G	G	C	G	C	C	C	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640172448	FVB_NJ_3_95799831	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95903220 () rs orientation: forward

Symbol	Name	Function Class
Gm9052	predicted gene 9052	83 bp upstream
Gm65578	predicted gene, 65578	1195 bp downstream
Plekho1	pleckstrin homology domain containing, family O member 1	mRNA-UTR
Rr581114	regulatory region 581114	1408 bp distal
Rr581115	regulatory region 581115	1901 bp distal
Rr581116	regulatory region 581116	within coordinates
Rr581117	regulatory region 581117	1412 bp proximal
Tssr30672	transcription start site region 30672	1866 bp downstream
Tssr30673	transcription start site region 30673	1786 bp downstream
Tssr30674	transcription start site region 30674	77 bp upstream
Tssr30675	transcription start site region 30675	198 bp upstream
Tssr30676	transcription start site region 30676	237 bp upstream
Tssr34578	transcription start site region 34578	249 bp upstream
Tssr34579	transcription start site region 34579	216 bp upstream
Tssr34580	transcription start site region 34580	186 bp upstream
Tssr34581	transcription start site region 34581	106 bp upstream
Tssr34582	transcription start site region 34582	87 bp upstream
Tssr34583	transcription start site region 34583	51 bp upstream
Tssr34584	transcription start site region 34584	28 bp downstream
Tssr34585	transcription start site region 34585	91 bp downstream
Tssr34586	transcription start site region 34586	1404 bp downstream